ngs-analysis
Guided NGS intake, local execution, and public-pipeline routing for BCL, FASTQ, DNA variant, RNA-seq, single-cell, epigenomics, amplicon, and metagenomics analy
Install
/pluginsType /plugins in Codex and pick ngs-analysis; on desktop, use the Plugins tab in the sidebar.
Bundled 18 skills
ngs-amplicon-microbiome ngs-analysis-router ngs-atacseq-peaks-qc ngs-bcl-to-fastq ngs-bulk-rnaseq ngs-bulk-rnaseq-counts-qc ngs-bulk-rnaseq-differential-expression ngs-chip-cutrun-peaks-qc ngs-dna-germline-variants ngs-dna-somatic-variants ngs-dna-umi-panel-variants ngs-dna-variant-calling ngs-epigenomics-peaks ngs-fastq-qc ngs-runtime-env ngs-scrna-seq ngs-shotgun-metagenomics scrna-seq-qc
Upstream directory · Also in the API key directory